COSPA

Welcome to the official documentation of Charting spatial gene-metabolic network with COSPA!

🗺️ Overview

COSPA is a Python package designed to analyze and visualize spatial gene-metabolic networks. It provides tools to integrate spatial transcriptomics data with metabolic network information, enabling researchers to explore the spatial organization of metabolic processes in tissues.

🚀 Getting Started

Want to start using it immediately? Check out the following sections:

📥 Installation

COSPA is a Python package that can be installed via pip. You can install it from PyPI or from the source.

Details on how to install COSPA can be found in the Installation section.

🔧 Usage

COSPA is designed to be user-friendly and easy to use. The package provides a set of functions that can be used to perform various tasks related to database parsing and preprocessing, spatial gene-metabolic coordination alignment, spatial gene-metabolic network construction, and visualization.

📖 Tutorials

Moreover, you can find some tutorials in the Tutorial section. These tutorials will guide you through the process of using COSPA for your own data analysis.

📚 API Reference

For more detailed information, please refer to the API Reference.